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Molecular Nodes

by bradyajohnston·Workflow

Images © bradyajohnston. Used for product review; image policy.

Why we like it

Molecular Nodes stands out in the Blender Extensions library for pulling scientific molecular data into Geometry Nodes, and it has passed 50,000 downloads.

What is Molecular Nodes?

Molecular Nodes is an add-on that brings molecular import and animation into Blender. It reads a range of atomic data formats and lets you manipulate and animate that data directly inside Blender's Geometry Nodes.

The add-on handles atoms, small molecules, protein structures, molecular dynamics trajectories, cryo electron microscopy, cryo electron-tomography, starfile instancing and CellPack molecular ensembles. It ships with a suite of pre-built nodes for selecting, styling and animating molecular data, and it can download structural data from the PDB and AFPDB or import data files from disk with download caching. The documentation includes further examples and tutorials.

Molecular Nodes is compatible with Blender 5.1 and newer, and runs on Windows, macOS Apple Silicon and Linux. It is released under the GNU General Public License v3.0 or later. You can add it by dragging and dropping it into Blender or installing from disk.

Who is Molecular Nodes best for?

Molecular Nodes is best for importing and animating molecular and structural data inside Blender's Geometry Nodes.

How much does Molecular Nodes cost?

Molecular Nodes is completely free to download and use.

Key features

  • Imports atoms, small molecules, protein structures, molecular dynamics trajectories, cryo electron microscopy and tomography, starfile instancing and CellPack molecular ensembles
  • Pre-built nodes for selecting, styling and animating molecular data inside Geometry Nodes
  • Downloads structural data from the PDB and AFPDB
  • Imports data files from disk with download caching
  • Compatible with Blender 5.1 and newer
  • Runs on Windows, macOS Apple Silicon and Linux

Tags

#molecular visualization#Geometry Nodes#import-export#protein structures#PDB#animation#Blender add-on#science

Frequently asked questions

Does Molecular Nodes work with Blender 5.1?

Molecular Nodes lists compatibility with Blender 5.1 and newer, so version 5.1 is supported. The 4.5.12 release notes state the add-on was updated for Blender 5.1 and Python 3.13, which points to that version being the current baseline. If you are running an older Blender release, the extension page does not list it as compatible, so you may need to update Blender. For the latest compatibility details and any version-specific notes, refer to the developer's page linked with this listing before installing.

What platforms does Molecular Nodes support?

Molecular Nodes provides download packages for Windows, macOS Apple Silicon and Linux, and each platform has its own build listed on the extension page. Those three are the supported platforms named in the listing. If you run a different setup, such as an Intel Mac, that configuration is not listed among the supported platforms, so you would need to confirm whether it works. For the current list of supported platforms and any hardware details, check the developer's page linked with this listing before downloading.

Does Molecular Nodes need internet access?

Molecular Nodes requests network permission to download structural data from the PDB and AFPDB, so an internet connection is used when you fetch structures from those databases. It also requests file permission to import data files from disk and to cache downloads. That means once data is available locally, working from those files relies on the file access permission rather than the network. If you plan to load structures directly from the online databases, you will need connectivity; local files can be used without it.

How do I install Molecular Nodes?

Molecular Nodes can be installed by dragging and dropping the downloaded package into Blender, or by downloading the file and installing it from disk through Blender's extensions preferences. The extension page provides separate packages for Windows, macOS Apple Silicon and Linux, so download the one that matches your platform before installing. Because the add-on requires Blender 5.1 or newer, make sure your Blender version meets that requirement first. For step-by-step guidance and troubleshooting, the documentation and the developer's page linked with this listing cover the process.

What license is Molecular Nodes under?

Molecular Nodes is released under the GNU General Public License v3.0 or later, which is an open-source license. In this catalog the add-on is listed as free, and no price is set here. Licensing terms can change over time, so for the current license text and any conditions that apply to your use, refer to the developer's page and the project's license file linked with this listing. That is the authoritative source for how you may use, modify and distribute the add-on.

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